SNP Profiles of IMC 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
1._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
2._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
3._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
4._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
5._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	_	CC	AA	GG	CC	AA
6._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	_	CC	AA
7._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	_	CC	AA
8._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	_	CC	AA	GG	CC	AA
9._RUQ_828	_	AG	GG	TT	_	_	_	TT	_	_	_	_	CC	AA
10._IMC_2	_	AG	CG	TT	_	CC	TT	GG	CC	_	AA	GG	CC	AA
11._GC-04-42-3-6	GG	AG	CC	AA	AG	CC	AA	AA	_	_	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CC	CT	CC	GT	AA	CC	AC	GG	GT	CC	AC
1._IMC_2	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
2._IMC_2	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
3._GC-04-042-3-06	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
4._GC-04-042-3-06	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
5._IMC_2	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
6._IMC_2	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
7._GC-04-042-3-06	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
8._GC-04-042-3-06	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
9._RUQ_828	_	_	_	_	TT	CC	GT	_	CC	AC	CG	GT	CC	AC
10._IMC_2	TT	AA	_	CC	TT	CC	GG	AA	CC	AA	GG	GG	CT	CC
11._GC-04-42-3-6	AA	AT	GG	GG	AA	GG	AC	_	GG	AC	CG	AC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
1._IMC_2	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
2._IMC_2	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
3._GC-04-042-3-06	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
4._GC-04-042-3-06	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
5._IMC_2	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
6._IMC_2	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
7._GC-04-042-3-06	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
8._GC-04-042-3-06	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
9._RUQ_828	AG	_	AT	CT	AG	CC	AC	CT	TT	CC	_	_	X_X	X_X
10._IMC_2	AA	GG	AA	CT	_	_	AC	CT	GT	AC	TT	GG	X_X	X_X
11._GC-04-42-3-6	_	GG	AT	AG	AG	GG	AC	AG	AA	CC	TT	CG	X_X	X_X

Input profile: IMC_2 RUQ_828

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._IMC_2

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

4._IMC_2 GC-04-042-3-06

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

5._IMC_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

6._IMC_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._IMC_2 GC-04-042-3-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

9._IMC_2 RUQ_828

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._IMC_2

76.5 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

45.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25